Zhou Group Publications

2010

    140. H. Tjong and H.-X. Zhou (2010). The folding transition-state ensemble of a four-helix bundle protein: helix propensity as a determinant and macromolecular crowding as a probe. Biophys. J. (accepted).

    139. H.-X. Zhou (2010). From induced fit to conformational selection: a continuum of binding mechanism controlled by the timescale of conformational transitions. Biophys. J. (accepted).

    138. S. Qin, D. D. L. Minh, J. A. McCammon, and H.-X. Zhou (2010). Method to predict crowding effects by postprocessing molecular dynamics trajectories: application to the flap dynamics of HIV-1 protease. J. Phys. Chem. Lett. 1, 107-110.

    137. H.-X. Zhou and J. A. McCammon (2010). The gates of ion channels and enzymes. Trends Biochem. Sci. (in press).

2009

    136. A. W. Maniccia, W. Yang, J. A. Johnson, S. Li, H. Tjong, H.-X. Zhou, L. A. Shaket, and J. J. Yang (2019). Inverse tuning of metal binding affinity and protein stability by altering charged coordination residues in designed calcium binding proteins. PMC Biophysics 2:11.

    135. M. Yi, T. A. Cross, and H.-X. Zhou (2009). Conformational heterogeneity of the M2 proton channel: a structural model for channel activation. Proc. Natl. Acad. Sci. USA 106, 13311-13316.pdf  Supporting Figures  Supporting Text.

    134. J. Batra, K. Xu, S.B. Qin, and H.-X. Zhou (2009). Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences. Biophys. J. 97, 906-911.pdf

    133. S.B. Qin and H.-X. Zhou (2009). Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability. Biophys. J. 97, 12-19.pdf  Faculty of 1000 Evaluation

    132. S.B. Qin and H.-X. Zhou (2009). Dissection of the high rate constant for the binding of a ribotoxin to the ribosome. Proc. Natl. Acad. Sci. USA 106, 6974-7979.pdf  Supporting Information  Commentary

    131. H.-X. Zhou and M. K. Gilson (2009). Theory of free energy and entropy in noncovalent binding. Chem. Rev. 109, 4092-4107.pdf  Supporting Information

    130. J. Batra, K. Xu, and H.-X. Zhou (2009). Nonaddtive effects of mixed crowding on protein stability. Proteins 77, 133-138.pdf

    129. H.-X. Zhou (2009). Crowding effects of membrane proteins. J. Phys. Chem. B 113, 7995-8005.pdf

    128. G. Schreiber, G. Haran, and H.-X. Zhou (2009). Fundamental aspects of protein-protein association kinetics. Chem. Rev. 109, 839-860.pdf

    127. G.-C. Dong, P.-H. Chuang, K.-c. Chang, P.-s. Jan, P.-I. Hwang, H.-B. Wu, M. Yi, H.-X. Zhou, and H. M. Chen (2009). Blocking effect of an immuno-suppressive agent, cynarin, on CD28 of T-Cell receptor. Pharm. Res. 26, 375-381.pdf

2008

    126. J.-M. Yuan, C.-L. Chyan, H.-X. Zhou, T.-Y. Chung, H. Peng, G. Ping, and G. Yang (2008). The effects of macromolecular crowding on the mechanical stability of protein molecules. Protein Sci. 17, 2156-2166.pdf

    125. S. Li, W. Yang, A. W. Maniccia, D. Barrow Jr., H. Tjong, H.-X. Zhou, and J. J. Yang (2008). Rational design of a conformation switchable Ca2+ and Tb3+ binding protein without using multiple coupled metal binding sites. FEBS J. 275, 5048-5061.pdf

    124. H.-X. Zhou (2008). The debut of PMC Biophysics. PMC Biophysics 1, 1.pdf

    123. H. Tjong and H.-X. Zhou (2008). Accurate calculations of binding, folding, and transfer free energies by a scaled generalized Born method. J. Chem. Theory Comput. 4, 1733-1744.pdf

    122. M. Yi, H. Nymeyer, and H.-X. Zhou (2008). Test of the Gouy-Chapman theory for a charged lipid membrane against explicit-solvent molecular dynamics simulations. Phys. Rev. Lett. 101, 038103.pdf  Faculty of 1000 Evaluation

    121. M. Yi, T. A. Cross, and H.-X. Zhou (2008). A secondary gate as a mechanism for inhibition of the M2 proton channel by amantadine. J. Phys. Chem. B 112, 7977-7979.pdf

    120. H.-X. Zhou (2008). A minimum-reaction-flux solution to master-equation models of protein folding. J. Chem. Phys. 128, 195104.pdf

    119. H.-X. Zhou, S.B. Qin, and H. Tjong (2008). Modeling protein-protein and protein-nucleic acid interactions: structure, thermodynamics, and kinetics. Annu. Report Comput. Chem. 4, 67-87.pdf

    118. H.-X. Zhou (2008). Effect of mixed macromolecular crowding agents on protein folding. Proteins 72, 1109-1113.pdf

    117. M. Yi, H. Tjong, and H.-X. Zhou (2008). Spontaneous conformational change and toxin binding in a7 nicotinic acetylcholine receptor: insight into channel activation and inhibition. Proc. Natl. Acad. Sci. 105, 8280-8285.pdf

    116. H. Tjong and H.-X. Zhou (2008). Prediction of protein solubility from calculation of transfer free energy. Biophys. J. 95, 2601-2609.pdf.

    115. R. Alsallaq and H.-X. Zhou (2008). Protein association with circular DNA: rate enhancement by nonspecific binding. J. Chem. Phys. 128, 115108.pdf

    114. H. Tjong and H.-X. Zhou (2008). On the dielectric boundary in Poisson-Boltzmann calculations. J. Chem. Theory Comput. 4, 507-514.pdf

    113. H.-X. Zhou, G. Rivas, and A. P. Minton (2008). Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences. Annu. Rev. Biophys. 37, 375-397.pdf

    112. H.-X. Zhou (2008). Calculation of free-energy differences and potentials of mean force by a multi-energy gap method. J. Chem. Phys. 128, 114104.pdf

    111. C. Li, M. Yi, J. Hu, H.-X. Zhou, and T. A. Cross (2008). Solid-state NMR and MD simulations of the anti-viral drug amantadine solubilized in DMPC bilayers. Biophys. J. 94, 1295-1302.pdf

    110. H. Neymer and H.-X. Zhou (2008). A Method to determine dielectric constants in non-homogeneous systems: application to biological membranes. Biophys. J. 94, 1185-1193.pdf

    109. W. Yang, H. Nymeyer, H.-X. Zhou, B. A. Berg, and R. Bruschweiler (2008). Quantitative computer simulations of biomolecules: a snapshot. J. Comput. Chem. 29, 668-672.pdf

    108. R. Alsallaq and H.-X. Zhou (2008). Electrostatic rate enhancement and transient complex of protein-protein association. Proteins 71, 320-335.pdf

    107. S.B. Qin and H.-X. Zhou (2008). Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II. J. Phys. Chem. B 112, 5955-5960.pdf

    106. H.-X. Zhou (2008). Protein folding in confined and crowded environments. Arch. Biochem. Biophys., 469, 76-82.pdf

2007

    105. H.-X. Zhou (2007). Helix formation inside a nanotube: possible influence of backbone-water hydrogen bonding by the confining surface through modulation of water activity. J. Chem. Phys. 127, 245101.pdf

    104. N. Bhattacharya, M. Yi, H.-X. Zhou, and T. Logan (2007). Backbone dynamics in an intramolecular prolylpeptide-SH3 complex from the diphtheria toxin repressor, DtxR. J. Mol. Biol. 374, 977-992.

    103. S.B. Qin and H.-X. Zhou (2007). A holistic approach to protein docking. Proteins 69, 743-749.pdf

    102. S.B. Qin and H.-X. Zhou (2007). meta-PPISP: a meta web server for protein-protein interaction site prediction. Bioinformaticss 23, 3386-3387.pdf

    101. H.-X. Zhou and S.B. Qin (2007). Interaction-site prediction for protein complexes: a critical assessment. Bioinformatics 23, 2203-2209.pdf

    100. H. Tjong and H.-X. Zhou (2007). GBr⁶NL: a generalized Born method for accurately reproducing solvation energy of the nonlinear Poisson-Boltzmann equation. J. Chem. Phys. 126, 195102.pdf

    99. H. Tjong, S.B. Qin, and H.-X. Zhou (2007). PI²PE: protein interface/interior prediction engine. Nucl. Acids Res. 35, W357-W362.pdf

    98. S.B. Qin and H.-X. Zhou (2007). Do electrostatic interactions destabilize protein-nucleic acid binding? Biopolymers 86, 112-118.pdf  InThisIssue

    97. H. Tjong and H.-X. Zhou (2007). GBr⁶: a parameterization-free, accurate, analytical generalized Born method. J. Phys. Chem. B 111, 3055-3061.pdf

    96. R. Alsallaq and H.-X. Zhou (2007). Prediction of protein-protein association rates from a transition-state theory. Structure 15, 215-224.pdf

    95. H. Tjong and H.-X. Zhou (2007). DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces. Nucl. Acids Res. 35, 1465-1477.pdf

    94. M. K. Gilson and H.-X. Zhou (2007). Calculation of protein-ligand binding affinities. Annu. Rev. Biophys. Biomol. Struct. 36, 21-42.E-print

    93. R. Alsallaq and H.-X. Zhou (2007). Energy landscape and transition state of protein-protein association. Biophys. J. 92, 1486-1502.pdf

2006

    92. H. Tjong and H.-X. Zhou (2006). The dependence of electrostatic solvation energy on dielectric constants in Poisson-Boltzmann calculations. J. Chem. Phys. 125, 206101.pdf

    91. H.-X. Zhou (2006). Quantitative relation between intermolecular and intramolecular binding of Pro-rich peptides to SH3 domains. Biophys. J. 91, 3170-3181.pdf

    90. X. Huang and H.-X. Zhou (2006). Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulations. Biophys. J. 91, 2451-2463.pdf

    89. F. Dong and H.-X. Zhou (2006). Electrostatic contribution to the binding stability of protein-protein complexes. Proteins 65, 87-102.pdf

    88. J. Hu, R. Fu, K. Nishimura, L. Zhang, H.-X. Zhou, D. D. Busath, V. Vijayvergiya, and T. A. Cross (2006). Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity. Proc. Natl. Acad. Sci. USA 103, 6865-6870.pdf

2005

    87. H.-X. Zhou (2005). How do biomolecular systems speed up and regulate rates? Phys. Biol. 2, R1-R25.Physical Biology  pdf

    86. B. A. Berg and H.-X. Zhou (2005). Rugged Metropolis sampling with simultaneous updating of two dynamical variables. Phys. Rev. E 72, 016712.pdf

    85. H. Chen and H.-X. Zhou (2005). Prediction of solvent accessibility and sites of deleterious mutations from protein sequence. Nucl. Acids Res. 33, 3193-3199.pdf

    84. D. S. Spencer, K. Xu, T. M. Logan, and H.-X. Zhou (2005). Effects of pH, salt, and macromolecular crowding on the stability of FK506-binding protein: an integrated experimental and theoretical study. J. Mol. Biol. 351, 219-232.

    83. H. Chen and H.-X. Zhou (2005). Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. Proteins 61, 21-35.pdf

    82. H.-X. Zhou (2005). Interactions of macromolecules with salt ions: an electrostatic theory for the Hofmeister effect. Proteins 61, 69-78.pdf

    81. A. D. J. van Dijk , S. J. de Vries, C. Dominguez, H. Chen, H.-X. Zhou, and A. M. J. J. Bonvin (2005). Data-driven docking: HADDOCK's adventures in CAPRI. Proteins 60, 232-238.pdf

    80. X. Huang, F. Dong, and H.-X. Zhou (2005). Electrostatic recognition and induced fit in the k-PVIIA toxin binding to Shaker potassium channel. J. Am. Chem. Soc 127, 6836-6849.pdf

    79. H.-X. Zhou (2005). A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles. Biophys. J. 88, 1608-1615.pdf

2004

    78. H.-X. Zhou and A. Szabo (2004). Enhancement of association rates by nonspecific binding to DNA and cell membranes. Phys. Rev. Lett. 93, 178101.pdf

    77. H.-X. Zhou (2004). Polymer models of protein stability, folding, and interactions. Biochemistry 43, 2141-2154.pdf

    76. H.-X. Zhou (2004). Loops, linkages, rings, catenanes, cages, and crowders: entropy-based strategies for stabilizing proteins. Acc. Chem. Res. 37, 123-130.pdf

    75. H.-X. Zhou (2004). Protein folding and binding in confined spaces and in crowded solutions. J. Mol. Recog. 17, 368-375.pdf

    74. H.-X. Zhou (2004). Improving the understanding of human genetic diseases through predictions of protein structures and protein-protein interaction sites. Curr. Med. Chem. 11, 539-549.

2003

    73. H.-X. Zhou (2003). How often does the myristoylated N-terminal latch of c-Abl come off? FEBS Lett. 552, 160-162.pdf

    72. H.-X. Zhou (2003). Effect of backbone cyclization on protein folding stability: chain entropies of both the unfolded and the folded states are restricted. J. Mol. Biol. 332, 257-264.reprint

    71. H.-X. Zhou (2003). Association and dissociation kinetics of colicin E3 and immunity protein 3: convergence of theory and experiment. Protein Sci. 12, 2379-2382.pdf

    70. H.-X. Zhou (2003). Effect of catenation on protein folding stability. J. Am. Chem. Soc. 125, 9280-9281.pdf  Faculty of 1000 Evaluation

    69. H.-X. Zhou (2003). Quantitative account of the enhanced affinity of two linked scFvs specific for different epitopes on the same antigen. J. Mol. Biol. 329, 1-8.reprint

    68. F. Dong, M. Vijayakumar, and H.-X. Zhou (2003). Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar. Biophys. J. 85, 49-60.pdf

    67. H.-X. Zhou (2003). Direct test of the Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. J. Am. Chem. Soc. 125, 2060-2061.pdf

    66. H.-X. Zhou and F. Dong (2003). Electrostatic contributions to the stability of a thermophilic cold shock protein. Biophys. J. 84, 2216-2222.pdf

    65. H.-X. Zhou (2003). Theory for the rate of contact formation in a polymer chain with local conformational transitions. J. Chem. Phys. 118, 2010-2015.pdf

2002

    64. H.-X. Zhou (2002). Toward the physical basis of thermophilic proteins: linking of enriched polar interactions and reduced heat capacity of unfolding. Biophys. J. 83, 3126-3133.pdf

    63. H.-X. Zhou (2002). Residual charge interactions in unfolded staphylococcal nuclease can be explained by the Gaussian-chain model. Biophys. J. 83, 2981-2986.pdf

    62. F. Dong and H.-X. Zhou (2002). Electrostatic contributions to T4 lysozyme stability: solvent-exposed charges versus semi-buried salt bridges. Biophys. J. 83, 1341-1347.pdf

    61. H.-X. Zhou (2002). Residual electrostatic effects in the unfolded state of the N-terminal domain of L9 can be attributed to non-specific non-local charge-charge interactions. Biochemistry 41, 6533-6538.pdf

    60. H.-X. Zhou (2002). Dimensions of denatured proteins chains from hydrodynamic data. J. Phys. Chem. B 106, 5769-5775.pdf

    59. H.-X. Zhou (2002). A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. Proc. Natl. Acad. Sci. USA 99, 3569-3574.pdf  Faculty of 1000 Evaluation

    58. H.-X. Zhou and R. Zwanzig (2002). Barrier crossing coupled to a small set of oscillators. J. Phys. Chem. A 106, 7562-7564.pdf

    57. A. H. Boschitsch, M. O. Fenley, and H.-X. Zhou (2002). Fast boundary element method for the linear Poisson-Boltzmann equation. J. Phys. Chem. B 202, 2741-2754.pdf

    56. H.-X. Zhou (2002). A model for the binding of the inactivation N-terminal to the ion pore of Shaker potassium channel: both electrostatic attraction and covalent linkage are required for rapid inactivation. J. Phys. Chem. B 106, 2393-2397.pdf

2001

    55. H.-X. Zhou (2001). The affinity-enhancing roles of flexible linkers in two-domain DNA-binding proteins. Biochemistry 40, 15069-15073.pdf  Faculty of 1000 Evaluation

    54. H.-X. Zhou and K. A. Dill (2001). Stabilization of proteins in confined spaces. Biochemistry 40, 11289-11293.pdf  Faculty of 1000 Evaluation

    53. M. Vijayakumar and H.-X. Zhou (2001). Salt bridges stabilize the folded structure of barnase. J. Phys. Chem. B 105, 7334-7340.pdf

    52. H.-X. Zhou (2001). Single-chain versus dimeric protein folding: thermodynamic and kinetic consequences of covalent linkage. J. Am. Chem. Soc. 123, 6730-6731.pdf

    51. H.-X. Zhou (2001). Loops in proteins can be modeled as worm-like chains. J. Phys. Chem. B 105, 6763-6766.pdf

    50. H.-X. Zhou and Y. Shan (2001). Prediction of protein interaction sites from sequence profiles and residue neighbor list. Proteins 44, 336-343.pdf

    49. H.-X. Zhou (2001). Disparate ionic-strength dependence of on and off rates in protein- protein association. Biopolymers 59, 427-433.pdf  Faculty of 1000 Evaluation

    48. H.-X. Zhou and G. Wang (2001). Predicted structures of two proteins involved in human diseases. Cell Biochem. Biophys. 35, 35-47.pdf

    47. H.-X. Zhou (2001). A unified picture of protein hydration: prediction of hydrodynamic properties from known structures. Biophys. Chem. 93, 171-179.pdf

    46. Y. Shan, G. Wang, and H.-X. Zhou (2001). Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading. Proteins 42, 23-37.pdf

1989-2000

    45. M. Vijayakumar and H.-X. Zhou (2000). Prediction of residue-residue pair frequencies in proteins. J. Phys. Chem. B 104, 9755-9764.pdf

    44. Y. Shan and H.-X. Zhou (2000). Correspondence of potentials of mean force in proteins and in liquids. J. Chem. Phys. 113, 4794-4798.pdf

    43. A. M. Berezhkovskii, A. Szabo, G. H. Weiss, and H.-X. Zhou (1999). Reaction dynamics on a thermally fluctuating potential. J. Chem. Phys. 111, 9952-9957.

    42. M. Vijayakumar, H. Qian, and H.-X. Zhou (1999). Hydrogen bonds between short polar side chains and peptide backbone: prevalence in proteins and effects on helix-forming propensities. Proteins 34, 497-507.

    41. H.-X. Zhou, S. T. Wlodek, and J. A. McCammon (1998). Conformation gating as a mechanism for enzyme specificity. Proc. Natl. Acad. Sci. USA 95, 9280-9283.pdf

    40. M. Vijayakumar, K.-Y. Wong, G. Schreiber, A. R. Fersht, A. Szabo, and H.-X. Zhou (1998). Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar. J. Mol. Biol. 278, 1015-1024.pdf

    39. H.-X. Zhou (1998). Theory of the diffusion-influenced substrate binding rate to a buried and gated active site. J. Chem. Phys.108, 8146-8154.

    38. H.-X. Zhou (1998). Comparison of three Brownian-dynamics algorithms for calculating rate constants of diffusion-influenced reactions. J. Chem. Phys.108, 8139-8145.

    37. H.-X. Zhou, J. M. Briggs, S. Tara, and J. A. McCammon (1998). Correlation between rate of enzyme-substrate diffusional encounter and average Boltzmann factor around active site. Biopolymers 45, 355-360.

    36. H.-X. Zhou (1997). Enhancement of protein-protein association rate by interaction potential: accuracy of prediction based on local Boltzmann factor. Biophys. J. 73, 2441-2445.

    35. H.-X. Zhou, K.-Y. Wong, and M. Vijayakumar (1997). Design of fast enzymes by optimizing interaction potential in active site. Proc. Natl. Acad. Sci. USA 94, 12372-12377.

    34. H.-X. Zhou (1997). Theory and simulation of the influence of diffusion in enzyme-catalyzed reactions. J. Phys. Chem. B 101, 6642-6651.

    33. H.-X. Zhou and M. Vijayakumar (1997). Modeling of protein conformational fluctuations in pKa predictions. J. Mol. Biol. 267, 1002-1011.

    32. H.-X. Zhou (1997). Control of reduction potential by protein matrix: lesson from a spherical protein model. J. Biol. Inorg. Chem. 2, 109-113.

    31. H.-X. Zhou, J. M. Briggs, and J. A. McCammon (1996). A 240-fold electrostatic rate-enhancement for acetylcholinesterase-substrate binding can be predicted by the potential within the active site. J. Am. Chem. Soc. 118, 13069-13070.

    30. H.-X. Zhou (1996). Effect of interaction potentials in diffusion-influenced reactions with small reactive regions. J. Chem. Phys. 105, 7235-7237.

    29. H.-X. Zhou and A. Szabo (1996). Theory and simulation of the time-dependent rate coefficients of diffusion-influenced reactions. Biophys. J. 71, 2440-2457.

    28. H.-X. Zhou (1996). Dielectric continuum model for calculating reorganization free energies of electron transfer in proteins. J. Chem. Phys. 105, 3726-3733.

    27. H.-X. Zhou and Y. Chen (1996). Chemically driven motility of Brownian particles. Phys. Rev. Lett. 77, 194-197.

    26. M. J. Potter, B. Luty, H.-X. Zhou, and J. A. McCammon (1996). Time-dependent rate coefficients from Brownian dynamics simulations. J. Phys. Chem. 100, 5149-5154.

    25. H.-X. Zhou and A. Szabo (1996). Theory and simulation of stochastically-gated diffusion-influenced reactions. J. Phys. Chem. 100, 2597-2604.

    24. J. A. Ernst, R. T. Clubb, H.-X. Zhou, A. M. Gronenborn, and G. M. Clore (1995). Use of NMR to detect water within nonpolar protein cavities. Science 270, 1848-1849.

    23. H.-X. Zhou (1995). Calculation of translational friction and intrinsic viscosity. II. Application to globular proteins. Biophys. J. 69, 2298-2303.

    22. H.-X. Zhou (1995). Calculation of translational friction and intrinsic viscosity. I. General formulation for arbitrarily shaped particles. Biophys. J. 69, 2286-2297.

    21. H.-X. Zhou and A. Szabo (1995). Microscopic formulation of Marcus' theory of electron transfer. J. Chem. Phys. 103, 3481-3494.

    20. J. A. Ernst, R. T. Clubb, H.-X. Zhou, A. M. Gronenborn, and G. M. Clore (1995). Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR. Science 267, 1813-1817.

    19. H.-X. Zhou (1995). Continuum-model studies of redox reactions, complex formation, and electron transfer: the paradigm of cytochrome c and cytochrome c peroxidase. in A. Pullman, J. Jortner, and B. Pullman (Eds.), "Modelling of Biomolecular Structures and Mechanisms", 381-398. Kluwer Academic Publishers, Dordrecht.

    18. H.-X. Zhou (1994). Effects of mutations and complex formation on the redox potentials of cytochrome c and cytochrome c peroxidase. J. Am. Chem. Soc. 116, 10362-10375.

    17. J. F. Douglas, H.-X. Zhou, and J. B. Hubbard (1994). Hydrodynamic friction and the electrostatic capacitance of an arbitrarily-shaped objects. Phys. Rev. E 49, 5319-5331.

    16. H.-X. Zhou, A. Szabo, J. F. Douglas, and J. B. Hubbard (1994). A Brownian dynamics algorithm for calculating the hydrodynamic friction and the electrostatic capacitance of an arbitrarily-shaped object. J. Chem. Phys. 100, 3821-3826.

    15. H.-X. Zhou (1994). Macromolecular electrostatic energy within the nonlinear Poisson-Boltzmann equation. J. Chem. Phys. 100, 3152-3162.

    14. O. Schaad, H.-X. Zhou, A. Szabo, W. A. Eaton, and E. R. Henry (1993). Simulation of the kinetics of ligand binding to a protein by molecular dynamics: geminate rebinding of nitric oxide to myoglobin. Proc. Natl. Acad. Sci. USA 90, 9547-9551.

    13. H.-X. Zhou (1993). Boundary element solution of macromolecular electrostatics: interaction energy between two proteins. Biophys. J. 65, 955-963.

    12. H.-X. Zhou (1993). Brownian dynamics study of the influences of electrostatic interaction and diffusion on protein-protein association kinetics. Biophys. J. 64, 1711-1726.

    11. H.-X. Zhou (1993). Dynamic spherical model for solvation in a dipolar lattice. J. Phys. Chem. 97, 4216-4223.

    10. H.-X. Zhou, B. Bagchi, A. Papazyan, and M. Maroncelli (1992). Solvation dynamics in a Brownian dipole lattice: a comparison between theory and computer simulation. J. Chem. Phys. 97, 9311-9320.

    9. B. A. Luty, J. A. McCammon, and H.-X. Zhou (1992). Diffusive reaction rates from Brownian dynamics simulations: replacing the outer cut-off surface by an analytical treatment. J. Chem. Phys. 97, 5682-5686.

    8. H.-X. Zhou and B. Bagchi (1992). Dielectric and orientational relaxation in a Brownian dipolar lattice. J. Chem. Phys. 97, 3610-3620.

    7. H.-X. Zhou and A. Szabo (1991). Comparison between molecular dynamics simulations and the Smoluckowski theory of reactions in a hard sphere liquid. J. Chem. Phys. 95, 5948-5952.

    6. H.-X. Zhou and R. Zwanzig (1991). A rate process with an entropy barrier. J. Chem. Phys. 94, 6147-6152.

    5. H.-X. Zhou (1990). Kinetics of diffusion-influenced reactions studied by Brownian dynamics. J. Phys. Chem. 94, 8794-8800.

    4. H.-X. Zhou and F. A. Ferrone (1990). Theoretical description of the spatial dependence of sickle hemoglobin polymerization. Biophys. J. 58, 695-703.

    3. H.-X. Zhou and A. Szabo (1990). Mean field theory of transient fluorescence quenching in the frequency domain. J. Chem. Phys. 92, 3874-3880.

    2. H.-X. Zhou (1990). On the calculation of diffusive reaction rates using Brownian dynamics simulations. J. Chem. Phys. 92, 3092-3095.

    1. H.-X. Zhou (1989). The exponential nature of barrier crossings studied by Langevin dynamics. Chem. Phys. Lett. 164, 285-290.